Scott Cain's website

Bioinformatics, Perl, Cool Stuff
Powered by Drupal, an open source content management system

Email: sco...@scottcain.net

GMOD.org recent changes
Syndicate content
Track the most recent changes to the wiki in this feed. MediaWiki 1.23.13
Updated: 16 min 21 sec ago

JBrowse FAQ

Thu, 02/15/2018 - 16:31

‎How do I access data about my features in my callback or plugin

← Older revision Revision as of 20:31, 15 February 2018 Line 426: Line 426:  * feature.get('name') - for the name * feature.get('name') - for the name  * feature.get('my_gff_field') - to get any given field from your GFF3 column 9 * feature.get('my_gff_field') - to get any given field from your GFF3 column 9 −* feature.get('GT') - to get the genotypes of a VCF feature, it returns a complex object that you can inspect. See "variantIsHeterozygous" in the jbrowse configuration guide for an example of parsing the genotype+* feature.get('genotypes') - to get the genotypes of a VCF feature, it returns a complex object that you can inspect. See "variantIsHeterozygous" in the jbrowse configuration guide for an example of parsing the genotype  * feature.get('start') - to get start position * feature.get('start') - to get start position  * feature.get('end') - to get end position * feature.get('end') - to get end position Colin Diesh
Categories: Bio