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Bioinformatics, Perl, Cool Stuff
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Modularizing of chado/gbrowse tasks

From the last week:

  • Finished work on create_user_envirnment.pl which does (5 hours):
    • creates and populates a user specific database
    • creates a gmod.conf file for the user
    • Adds an entry to the organism table
    • Loads the user's GFF data into the database
    • Creates a GBrowse conf file
  • After the call on Wednesday, we decided to take this functionality and break it into separate scripts, so that work was started as well (2 hours so far).
  • Created test dna segments from arabidopsis data (1 hour)

Total: 8 hours